A B C D E F G H I L M N O P R S T U V W X Y Z

A

AbstractModule - class org.iges.anagram.AbstractModule.

Provides default implementations of most of the Module interface, plus some convenience methods for logging and throwing exceptions.

AbstractModule() - Constructor for class org.iges.anagram.AbstractModule

AbuseFilter - class org.iges.anagram.filter.AbuseFilter.

A filter that tracks the number of hits per hour for each IP that uses this server, and blocks requests that have exceeded the IP's abuse limit.

AbuseFilter.HitLimiter - class org.iges.anagram.filter.AbuseFilter.HitLimiter.

Tracks hits/hour, and switches to a blocked state if the number exceeds a given threshold.

AbuseFilter() - Constructor for class org.iges.anagram.filter.AbuseFilter

addDot(String) - Method in class org.iges.anagram.PrivilegeMgr

addHandle(DataHandle) - Method in class org.iges.anagram.Catalog

Adds a handle to the correct dir, creating it if necessary

addHit(long) - Method in class org.iges.anagram.filter.AbuseFilter.HitLimiter

Registers a hit at the time given

addTemp(TempDataHandle) - Method in class org.iges.anagram.Catalog

Adds a temporary dataset to the catalog.

addTemp(TempDataHandle, boolean) - Method in class org.iges.anagram.Catalog

AdminService - class org.iges.anagram.service.AdminService.

Provides administrative functions, protected by a simple authorization mechanism.

AdminService() - Constructor for class org.iges.anagram.service.AdminService

allowIsMostRecent(String) - Method in class org.iges.anagram.Privilege

allows(String) - Method in class org.iges.anagram.Privilege

Returns true if this privilege set permits access to the catalog path given.

allowTags - Variable in class org.iges.anagram.Privilege

AnagramError - error org.iges.anagram.AnagramError.

Thrown if an unrecoverable error occurs, that normal server code should not try to anticipate.

AnagramError() - Constructor for class org.iges.anagram.AnagramError

Creates an AnagramException with no message

AnagramError(String) - Constructor for class org.iges.anagram.AnagramError

Creates an AnagramException with the message given

AnagramException - exception org.iges.anagram.AnagramException.

The base class for all exceptions thrown by Anagram objects.

AnagramException() - Constructor for class org.iges.anagram.AnagramException

Creates an AnagramException with no message

AnagramException(String) - Constructor for class org.iges.anagram.AnagramException

Creates an AnagramException with the message given

AnagramException(String, Throwable) - Constructor for class org.iges.anagram.AnagramException

Creates an AnagramException with the message and cause given

AnagramServlet - class org.iges.anagram.AnagramServlet.

The servlet component of the Anagram framework.

AnagramServlet() - Constructor for class org.iges.anagram.AnagramServlet

ANALYSIS_PREFIX - Static variable in class org.iges.anagram.filter.AnalysisFilter

AnalysisFilter - class org.iges.anagram.filter.AnalysisFilter.

Performs analysis for requests that contain analysis expressions.

AnalysisFilter() - Constructor for class org.iges.anagram.filter.AnalysisFilter

analyzer - Variable in class org.iges.grads.server.GradsTool

applicable - Variable in class org.iges.anagram.filter.AnalysisFilter

ASCIIDataService - class org.iges.anagram.service.ASCIIDataService.

Provides data subsets in ASCII comma-delimited format.

ASCIIDataService() - Constructor for class org.iges.anagram.service.ASCIIDataService

attName - Variable in class org.iges.grads.server.MetadataFilter

attPrefix - Variable in class org.iges.grads.server.MetadataFilter

attributePassesFilters(MetadataAttribute, List, boolean) - Static method in class org.iges.grads.server.MetadataFilter

If any of the filters in the given list recommends removing the attribute, returns false.

attSuffix - Variable in class org.iges.grads.server.MetadataFilter

authCode - Variable in class org.iges.anagram.service.AdminService

available - Variable in class org.iges.anagram.DataHandle

B

baseDir - Variable in class org.iges.anagram.Store

baseTypeFactory - Variable in class org.iges.grads.server.GradsDODSModule

BinaryDataService - class org.iges.anagram.service.BinaryDataService.

Provides data subsets in DODS binary format

BinaryDataService() - Constructor for class org.iges.anagram.service.BinaryDataService

binaryNames - Static variable in class org.iges.grads.server.GradsTaskModule

blockFile(String) - Method in class org.iges.anagram.filter.AbuseFilter

bounds - Variable in class org.iges.grads.server.GradsAnalysisModule.ParsedExpression

Bounds - class org.iges.util.Bounds.

This is actually a container for two similar classes, Bounds.Grid and Bounds.World.

Bounds.Grid - class org.iges.util.Bounds.Grid.

Represents a 4-dimensional constraint in grid (relative) coordinates.

Bounds.Grid(long, long, long, long, long, long, long, long) - Constructor for class org.iges.util.Bounds.Grid

Creates a Bounds.Grid object with the constraints given.

Bounds.Grid(Range.Long, Range.Long, Range.Long, Range.Long) - Constructor for class org.iges.util.Bounds.Grid

Bounds.Grid(String, boolean) - Constructor for class org.iges.util.Bounds.Grid

Creates a Bounds.Grid object from a space-separated string.

Bounds.World - class org.iges.util.Bounds.World.

Represents a 4-dimensional constraint in world (absolute) coordinates.

Bounds.World(Range.Double, Range.Double, Range.Double, Range.Date) - Constructor for class org.iges.util.Bounds.World

Creates a Bounds.World object with the constraints given.

Bounds.World(String) - Constructor for class org.iges.util.Bounds.World

Creates a Bounds.World object from a space-separated string.

Bounds() - Constructor for class org.iges.util.Bounds

bufferSize - Variable in class org.iges.grads.server.GradsSubsetter

buildCmdString(String[]) - Method in class org.iges.grads.server.Task

Turns an array of Strings into a single space-separated String

buildDatasetNameList(List) - Method in class org.iges.grads.server.GradsAnalysisModule

buildDimList(DArray) - Method in class org.iges.grads.server.GradsGridSubsetter.Serializer

Pre-calculates various statistics for the subset grid which will be used to support ASCII formatting and/or subsampling during the streaming operation

buildFunctionMap() - Method in class org.iges.grads.server.GradsDODSModule

buildInheritance(Setting) - Method in class org.iges.anagram.PrivilegeMgr

buildIPRanges(Setting) - Method in class org.iges.anagram.PrivilegeMgr

buildPrivileges(Setting) - Method in class org.iges.anagram.PrivilegeMgr

buildSummary() - Method in class org.iges.anagram.ClientRequest

Used in writing log messages

C

cal - Variable in class org.iges.anagram.Log.Rotater

calcSpaceRes(String, String) - Method in class org.iges.grads.server.GradsGridExtracter

Helper for writeWebInfo()

calcTimeRes() - Method in class org.iges.grads.server.GradsGridExtracter

Helper for writeWebInfo()

calculateBounds() - Method in class org.iges.grads.server.dap.GradsArray

Translates dimension information stored in this object into a Bounds.Grid object for the Dataset.getSubset() method.

catalog - Variable in class org.iges.anagram.Server

Catalog - class org.iges.anagram.Catalog.

Manages the list of available data objects.

CATALOG_FILE - Static variable in class org.iges.anagram.Catalog

Catalog() - Constructor for class org.iges.anagram.Catalog

ce - Variable in class org.iges.anagram.ClientRequest

ChainedException - exception org.iges.util.ChainedException.

An exception class supporting chaining.

ChainedException() - Constructor for class org.iges.util.ChainedException

ChainedException(String) - Constructor for class org.iges.util.ChainedException

ChainedException(String, Throwable) - Constructor for class org.iges.util.ChainedException

check() - Method in class org.iges.anagram.Log.Rotater

Re-opens logfile if the name has rotated.

checkBlock(ClientRequest, long, long) - Method in class org.iges.anagram.filter.AbuseFilter

checkDependencies(DataHandle) - Method in class org.iges.anagram.Catalog

checkErrors() - Method in class org.iges.grads.server.Task

Parses output looking for error messages, defined as lines beginning with the string contained in ERROR_INDICATOR (currently "error: ").

checkForAllowedSubPath(String) - Method in class org.iges.anagram.Privilege

checkLimits() - Method in class org.iges.anagram.Catalog

checkOutput(int, File) - Method in class org.iges.grads.server.GradsTaskModule

Does the actual work for verifyGrads()

chooseGradsBinary(List) - Method in class org.iges.grads.server.GradsAnalysisModule

CLASSIC - Static variable in class org.iges.grads.server.GradsDataInfo

clearTemp() - Method in class org.iges.anagram.Catalog

Deletes all temporary entries in the catalog

clientMessage - Variable in class org.iges.anagram.ModuleException

ClientRequest - class org.iges.anagram.ClientRequest.

Contains all information associated with a particular server request

ClientRequest(HttpServletRequest, HttpServletResponse, Privilege, Service, String, String, Handle) - Constructor for class org.iges.anagram.ClientRequest

Creates a new client request with the specified settings

cmd - Variable in class org.iges.grads.server.Task

cmdString - Variable in class org.iges.grads.server.Task

COARDS_FILTERS - Static variable in class org.iges.grads.server.MetadataFilter

Filters to remove all COARDS metadata.

completeGrads - Variable in class org.iges.grads.server.GradsTaskModule

completeName - Variable in class org.iges.anagram.Handle

computeValue() - Method in class org.iges.anagram.Log.Rotater

Calculates the filename for the current time

ConfigException - exception org.iges.anagram.ConfigException.

Thrown when a module is unable to compensate for invalid or missing settings during configuration.

ConfigException(Module, String) - Constructor for class org.iges.anagram.ConfigException

Creates a ConfigException associated with the given Module, with the given message.

ConfigException(Module, String, Setting) - Constructor for class org.iges.anagram.ConfigException

Creates a ConfigException associated with the given Module and Setting, with the given message.

configFile - Variable in class org.iges.anagram.Server

configModule(Module, Setting) - Method in class org.iges.anagram.Server

configModule(Module, Setting) - Method in class org.iges.anagram.AbstractModule

Convenience method - extracts the appropriate sub-setting from the parent setting, and uses it to configure the module given

configure(Setting) - Method in class org.iges.anagram.Store

configure(Setting) - Method in class org.iges.anagram.Server

This method should not be called from outside Server.

configure(Setting) - Method in class org.iges.anagram.PrivilegeMgr

configure(Setting) - Method in interface org.iges.anagram.Module

Configures the module according to the settings provided.

configure(Setting) - Method in class org.iges.anagram.Mapper

configure(Setting) - Method in class org.iges.anagram.Log

configure(Setting) - Method in class org.iges.anagram.Catalog

configure(Setting) - Method in class org.iges.anagram.AnagramServlet

configure(Setting) - Method in class org.iges.anagram.AbstractModule

Configures the module according to the settings provided.

configure(Setting) - Method in class org.iges.anagram.service.XMLCatalogService

configure(Setting) - Method in class org.iges.anagram.service.WebErrorService

configure(Setting) - Method in class org.iges.anagram.service.UploadService

configure(Setting) - Method in class org.iges.anagram.service.InfoService

configure(Setting) - Method in class org.iges.anagram.service.HelpService

configure(Setting) - Method in class org.iges.anagram.service.DODSErrorService

configure(Setting) - Method in class org.iges.anagram.service.DirectoryService

configure(Setting) - Method in class org.iges.anagram.service.DDSService

configure(Setting) - Method in class org.iges.anagram.service.DASService

configure(Setting) - Method in class org.iges.anagram.service.BinaryDataService

configure(Setting) - Method in class org.iges.anagram.service.ASCIIDataService

configure(Setting) - Method in class org.iges.anagram.service.AdminService

configure(Setting) - Method in class org.iges.anagram.filter.OverloadFilter

configure(Setting) - Method in class org.iges.anagram.filter.Filter

configure(Setting) - Method in class org.iges.anagram.filter.AbuseFilter

configure(Setting) - Method in class org.iges.grads.server.GradsUploadModule

configure(Setting) - Method in class org.iges.grads.server.GradsUpdateModule

configure(Setting) - Method in class org.iges.grads.server.GradsTool

configure(Setting) - Method in class org.iges.grads.server.GradsTaskModule

configure(Setting) - Method in class org.iges.grads.server.GradsSubsetter

configure(Setting) - Method in class org.iges.grads.server.GradsImportModule

configure(Setting) - Method in class org.iges.grads.server.GradsExtracter

configure(Setting) - Method in class org.iges.grads.server.GradsDODSModule

configure(Setting) - Method in class org.iges.grads.server.GradsAnalysisModule

CONSOLE_MODE - Static variable in class org.iges.anagram.Log

Mode for log output

consoleMode() - Method in class org.iges.anagram.Log

Directs log output to the console (stderr).

consume(StringTokenizer, String) - Method in class org.iges.grads.server.GradsAnalysisModule.ParsedExpression

contains(Range.Date) - Method in class org.iges.util.Range.Date

Tests whether a given value is contained in this range

contains(Range.Double) - Method in class org.iges.util.Range.Double

Tests whether a given value is contained in this range

contains(Range.Long) - Method in class org.iges.util.Range.Long

Tests whether a given value is contained in this range

contains(String) - Method in class org.iges.anagram.DirHandle

Returns true if this directory contains a handle that matches the name given

contains(String) - Method in class org.iges.anagram.Catalog

Returns true if the catalog contains a handle that matches the given pathname.

convertGradsDateToCOARDS(String) - Method in class org.iges.grads.server.GradsGridExtracter

Converts a GrADS date, a string with format yyyy:M:d:H or yyyy:M:d:H:m, to a udunits-compatible COARDS date, which is a floating point number in units of days since Jan 01, 0001.

counter - Variable in class org.iges.grads.server.GradsAnalysisModule

createFilters() - Method in class org.iges.anagram.AnagramServlet

Called by init(Server, Module).

createHandle(String, String, File, String, String, boolean, File, List, List) - Method in class org.iges.grads.server.GradsImportModule

createModules() - Method in class org.iges.anagram.Server

Creates the components of the server

createServices() - Method in class org.iges.anagram.Mapper

createTime - Variable in class org.iges.anagram.DataHandle

createTime - Variable in class org.iges.grads.server.GradsTempHandle

createTime - Variable in class org.iges.grads.server.GradsDataInfo

CRITICAL - Static variable in class org.iges.anagram.Log

Level of log output

critical(Module, String) - Method in class org.iges.anagram.Log

Writes a critical error message to the current log output.

ctl - Variable in class org.iges.grads.server.GradsDataInfo

currentLoad - Variable in class org.iges.anagram.filter.OverloadFilter

D

DASService - class org.iges.anagram.service.DASService.

Provides the DODS Data Attribute Structure for a data object

DASService() - Constructor for class org.iges.anagram.service.DASService

data - Variable in class org.iges.grads.server.GradsGridSubsetter.DataMethods

data - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

data - Variable in class org.iges.grads.server.GradsExtracter

dataFile - Variable in class org.iges.grads.server.GradsTempHandle

DataHandle - class org.iges.anagram.DataHandle.

An entry in the catalog representing a data object being served by the server

DataHandle(String, String, Object, long) - Constructor for class org.iges.anagram.DataHandle

Creates a new DataHandle

dataHandles - Variable in class org.iges.grads.server.GradsTempHandle

dataNames - Variable in class org.iges.grads.server.GradsAnalysisModule.ParsedExpression

dataPath - Variable in class org.iges.anagram.ClientRequest

dataType - Variable in class org.iges.grads.server.GradsDataInfo

dateTemplate - Variable in class org.iges.anagram.Log

DDSService - class org.iges.anagram.service.DDSService.

Provides the DODS Data Descriptor Structure for a data object

DDSService() - Constructor for class org.iges.anagram.service.DDSService

DEBUG - Static variable in class org.iges.anagram.Log

Level of log output

debug() - Method in class org.iges.anagram.AnagramServlet

Same as in AbstractModule.

debug() - Method in class org.iges.anagram.AbstractModule

Convenience method - returns true if debugging output is enabled for this module.

debug(Module, String) - Method in class org.iges.anagram.Log

Writes a debug message to the current log output.

debug(String) - Method in class org.iges.anagram.AbstractModule

Convenience method - sends a debug message to the logger

defaultHitLimit - Variable in class org.iges.anagram.filter.AbuseFilter

defaultLevel - Variable in class org.iges.anagram.Log

defaultPrivilege - Variable in class org.iges.anagram.PrivilegeMgr

defaultStorage - Variable in class org.iges.grads.server.GradsUploadModule

defaultStorageLimit - Variable in class org.iges.grads.server.GradsAnalysisModule

defaultSubsetSize - Variable in class org.iges.grads.server.GradsDODSModule

defaultTimeLimit - Variable in class org.iges.grads.server.GradsAnalysisModule

defaultTimeout - Variable in class org.iges.anagram.filter.AbuseFilter

deleteStorage() - Method in interface org.iges.anagram.TempDataHandle

Deletes the temporary data.

deleteStorage() - Method in class org.iges.grads.server.GradsTempHandle

denyTags - Variable in class org.iges.anagram.Privilege

dependencies - Variable in class org.iges.grads.server.GradsTempHandle

description - Variable in class org.iges.anagram.DataHandle

descriptorFile - Variable in class org.iges.grads.server.GradsDataInfo

destroy() - Method in class org.iges.anagram.Server

Shuts down the server

destroy() - Method in class org.iges.anagram.AnagramServlet

Called when the server is shutting down

dims - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

DirectoryService - class org.iges.anagram.service.DirectoryService.

Provides HTML listings of the server's contents for a given directory path.

DirectoryService() - Constructor for class org.iges.anagram.service.DirectoryService

directSubset - Variable in class org.iges.grads.server.GradsDataInfo

DirHandle - class org.iges.anagram.DirHandle.

Represents a sub-directory of the server catalog.

DirHandle(String) - Constructor for class org.iges.anagram.DirHandle

DispatchFilter - class org.iges.anagram.filter.DispatchFilter.

Dispatches a client request to its designated service.

DispatchFilter() - Constructor for class org.iges.anagram.filter.DispatchFilter

doAnalysis(ClientRequest) - Method in class org.iges.anagram.filter.AnalysisFilter

doAnalysis(String, String, Privilege) - Method in class org.iges.anagram.Tool

Performs an analysis task.

doAnalysis(String, String, Privilege) - Method in class org.iges.grads.server.GradsTool

doAnalysis(String, String, Privilege) - Method in class org.iges.grads.server.GradsAnalysisModule

docURL - Variable in class org.iges.grads.server.GradsDataInfo

dods - Variable in class org.iges.grads.server.GradsTool

DODS - Static variable in class org.iges.grads.server.GradsDataInfo

dodsErrorHandler - Variable in class org.iges.anagram.AnagramServlet

DODSErrorService - class org.iges.anagram.service.DODSErrorService.

Sends an error message in the DODS protocol format

DODSErrorService() - Constructor for class org.iges.anagram.service.DODSErrorService

dodsErrorServices - Variable in class org.iges.anagram.AnagramServlet

dodsName - Variable in class org.iges.grads.server.GradsDataInfo

doFilter(ClientRequest) - Method in class org.iges.anagram.filter.OverloadFilter

doFilter(ClientRequest) - Method in class org.iges.anagram.filter.Filter

doFilter(ClientRequest) - Method in class org.iges.anagram.filter.DispatchFilter

doFilter(ClientRequest) - Method in class org.iges.anagram.filter.AnalysisFilter

doFilter(ClientRequest) - Method in class org.iges.anagram.filter.AbuseFilter

doGet(HttpServletRequest, HttpServletResponse) - Method in class org.iges.anagram.AnagramServlet

Handles all incoming requests by doing the following: A non-exclusive lock on the server is obtained. A ClientRequest object is obtained from the Mapper module The request is logged and a timer is started. The request is passed to the head of the chain of Filters If an error occurs, the request is passed to the appropriate error handler. The total elapsed time is logged, the output stream is closed, and the server lock is released.

doImport(Setting) - Method in class org.iges.anagram.Tool

Creates usable handles for data objects specified by tags in the configuration file.

doImport(Setting) - Method in class org.iges.grads.server.GradsTool

doImport(Setting) - Method in class org.iges.grads.server.GradsImportModule

doPost(HttpServletRequest, HttpServletResponse) - Method in class org.iges.anagram.AnagramServlet

Handles POST requests.

DOUBLE_SIZE - Static variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

Used for calculating file and buffer sizes

doubleFormat - Static variable in class org.iges.grads.server.GradsGridExtracter

doUpdate(DataHandle) - Method in class org.iges.anagram.Tool

Brings the data handle provided up to date with respect to the data source.

doUpdate(DataHandle) - Method in class org.iges.grads.server.GradsUpdateModule

Checks if the DataHandle provided is out of date and updates it if necessary.

doUpdate(DataHandle) - Method in class org.iges.grads.server.GradsTool

Creates an up-to-date version of the data handle provided.

doUpload(String, InputStream, long, Privilege) - Method in class org.iges.anagram.Tool

Accepts an uploaded data object.

doUpload(String, InputStream, long, Privilege) - Method in class org.iges.grads.server.GradsUploadModule

Accepts an input stream, writes it to disk, and invokes the 'udfread' utility which generates a .dat and a .ctl file from a UDF input file, then creates a handle to the temporary data.

doUpload(String, InputStream, long, Privilege) - Method in class org.iges.grads.server.GradsTool

DummyFunction - class org.iges.grads.server.dap.DummyFunction.

A hack for the pre-JavaDODS 1.1 implementation of constraint expression parsing.

DummyFunction(String) - Constructor for class org.iges.grads.server.dap.DummyFunction

E

enabled - Variable in class org.iges.anagram.service.Service

enabled - Variable in class org.iges.anagram.filter.Filter

enabled(int, Module) - Method in class org.iges.anagram.Log

Returns true if logging detail is set to the given level or higher for the specified module.

END_OF_SEQUENCE - Static variable in class org.iges.grads.server.dap.GradsSequence

entries - Variable in class org.iges.anagram.DirHandle

entryFormat - Variable in class org.iges.anagram.Log

env - Variable in class org.iges.grads.server.Task

equals(Bounds.Grid) - Method in class org.iges.util.Bounds.Grid

equals(Object) - Method in class org.iges.grads.server.MetadataFilter

equals(Object) - Method in class org.iges.grads.server.MetadataAttribute

equals(Range.Double) - Method in class org.iges.util.Range.Double

ERROR - Static variable in class org.iges.anagram.Log

Level of log output

ERROR_INDICATOR - Static variable in class org.iges.grads.server.Task

String that subprocesses can print to indicate to the server that an error has occurred in their processing.

error(Module, String) - Method in class org.iges.anagram.Log

Writes an error message to the current log output.

error(String) - Method in class org.iges.anagram.AbstractModule

Convenience method - sends an error message to the logger

ErrorService - class org.iges.anagram.service.ErrorService.

A special type of service called when normal request processing produces an error.

ErrorService() - Constructor for class org.iges.anagram.service.ErrorService

escape(String, char) - Static method in class org.iges.util.Strings

eval(ServerDDS, Clause[], Object) - Method in class org.iges.grads.server.dap.DummyFunction

Get the value of this function.

evalBoolean(ServerDDS, Clause[], Object) - Method in class org.iges.grads.server.dap.DummyFunction

Get the value of this function.

everAllows(String) - Method in class org.iges.anagram.Privilege

Returns true if there is any possibility that the privilege set will permit access to a sub-path of the path given.

exceeded(long, long) - Method in class org.iges.anagram.filter.AbuseFilter.HitLimiter

Checks whether the hit limit has been exceeded

exclusive - Variable in class org.iges.util.ExclusiveLock

ExclusiveLock - class org.iges.util.ExclusiveLock.

An extension of the thread-lock concept which supports the concept of exclusive vs non-exclusive locking.

ExclusiveLock() - Constructor for class org.iges.util.ExclusiveLock

Creates a new ExclusiveLock

ExclusiveLock(int) - Constructor for class org.iges.util.ExclusiveLock

Creates a new ExclusiveLock with sufficient storage for the expected maximum number of non-exclusive locks, to prevent frequent reallocation of internal storage.

expression - Variable in class org.iges.grads.server.GradsAnalysisModule.ParsedExpression

extract(DataHandle) - Method in class org.iges.grads.server.GradsDODSModule

F

fail(String) - Method in class org.iges.anagram.AbstractModule

Convenience method - equivalent to throwing a ModuleException

fail(String, String) - Method in class org.iges.anagram.AbstractModule

Convenience method - equivalent to throwing a ModuleException

fail(String, Throwable) - Method in class org.iges.anagram.Server

fail(String, Throwable) - Method in class org.iges.anagram.AbstractModule

Convenience method - equivalent to throwing a ModuleException

fancyTypeName(BaseType) - Static method in class org.iges.anagram.service.InfoService

FILE_MODE - Static variable in class org.iges.anagram.Log

Mode for log output

fileFormat - Variable in class org.iges.anagram.Log.Rotater

fileModified(File, long) - Method in class org.iges.grads.server.GradsUpdateModule

FileResolver - class org.iges.util.FileResolver.

Provides slightly more flexible handling of paths than the java.io.File class.

FileResolver() - Constructor for class org.iges.util.FileResolver

Filter - class org.iges.anagram.filter.Filter.

A module that performs a step in the handling of a client request.

Filter() - Constructor for class org.iges.anagram.filter.Filter

filterName - Variable in class org.iges.anagram.filter.Filter

filters - Variable in class org.iges.anagram.AnagramServlet

findErrorHandler(ClientRequest) - Method in class org.iges.anagram.AnagramServlet

Returns an error service which uses the appropriate format based on the type of request.

findGrads(Setting) - Method in class org.iges.grads.server.GradsTaskModule

Attempts to locate a GrADS executable using settings given.

finish(Process, long) - Method in class org.iges.grads.server.Task

Waits for a running process to complete (or time out), and then performs cleanup and error-handling tasks.

FLOAT_SIZE - Static variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

Used for calculating file and buffer sizes

frequency - Variable in class org.iges.anagram.Log.Rotater

fullString - Variable in class org.iges.grads.server.GradsAnalysisModule.ParsedExpression

functionMap - Variable in class org.iges.grads.server.GradsDODSModule

G

generating - Variable in class org.iges.anagram.service.UploadService

generating - Variable in class org.iges.anagram.filter.AnalysisFilter

GenericFloat32 - class org.iges.grads.server.dap.GenericFloat32.

Implements the server-side version of Float32 All datatypes that appear in DDS'es for GrADS datasets must have server-side implementations, even if its just a shell.

GenericFloat32() - Constructor for class org.iges.grads.server.dap.GenericFloat32

Constructs a new GenericFloat32.

GenericFloat32(String) - Constructor for class org.iges.grads.server.dap.GenericFloat32

Constructs a new GenericFloat32 with name n.

GenericFloat64 - class org.iges.grads.server.dap.GenericFloat64.

Implements the server-side version of Float64 All datatypes that appear in DDS'es for GrADS datasets must have server-side implementations, even if its just a shell.

GenericFloat64() - Constructor for class org.iges.grads.server.dap.GenericFloat64

Constructs a new GenericFloat64.

GenericFloat64(String) - Constructor for class org.iges.grads.server.dap.GenericFloat64

Constructs a new GenericFloat64 with name n.

GenericInt32 - class org.iges.grads.server.dap.GenericInt32.

Implements the server-side version of Int32 All datatypes that appear in DDS'es for GrADS datasets must have server-side implementations, even if its just a shell.

GenericInt32() - Constructor for class org.iges.grads.server.dap.GenericInt32

Constructs a new GenericInt32.

GenericInt32(String) - Constructor for class org.iges.grads.server.dap.GenericInt32

Constructs a new GenericInt32 with name n.

GenericString - class org.iges.grads.server.dap.GenericString.

Implements the server-side version of String All datatypes that appear in DDS'es for GrADS datasets must have server-side implementations, even if its just a shell.

GenericString() - Constructor for class org.iges.grads.server.dap.GenericString

Constructs a new GenericString.

GenericString(String) - Constructor for class org.iges.grads.server.dap.GenericString

Constructs a new GenericString with name n.

get(Module, String) - Method in class org.iges.anagram.Store

Returns the file handle associated with the given entry name, for the given module.

get(Module, String, long) - Method in class org.iges.anagram.Store

Returns the file handle associated with the given entry name, for the given module.

get(Module, String, String) - Method in class org.iges.anagram.Store

Returns a unique (to this JVM session) file handle whose name is constructed using the given prefix and suffix, for the given module.

get(String) - Method in class org.iges.anagram.Catalog

getAllowMatch(String) - Method in class org.iges.anagram.Privilege

getAttribute(String) - Method in class org.iges.anagram.Setting

Returns the value of the named attribute of this tag.

getAttribute(String, String) - Method in class org.iges.anagram.Setting

Returns the value of the named attribute of this tag.

getAttribute(String, String) - Method in class org.iges.anagram.Privilege

getBaseURL(ClientRequest) - Method in class org.iges.anagram.service.Service

Convenience method that determines the base URL of the server, using the current request.

getBufferSize() - Method in class org.iges.grads.server.GradsGridSubsetter.DataMethods

Returns the size of the in-memory buffer to be used when streaming subsets from disk.

getCatalog() - Method in class org.iges.anagram.Server

Returns a handle to the data object catalog

getCause() - Method in class org.iges.util.ChainedException

getCE() - Method in class org.iges.anagram.ClientRequest

Returns the constraint expression associated with this request

getChildPath(String, DirHandle) - Method in class org.iges.anagram.Catalog

Used by add, remove and getDir Takes "basepath[/name1[/name2/../nameN]]" Returns name1 if followed by name2, or "" otherwise

getClientMessage() - Method in class org.iges.anagram.ModuleException

Returns the client message, if any.

getClosestMatch(String, SortedSet, String) - Method in class org.iges.anagram.Privilege

getCmd() - Method in class org.iges.grads.server.Task

Returns a printable string version of the external command.

getCompleteName() - Method in class org.iges.anagram.Handle

Returns the full online name of this entry

getCreateTime() - Method in interface org.iges.anagram.TempDataHandle

getCreateTime() - Method in class org.iges.anagram.DataHandle

getCreateTime() - Method in class org.iges.grads.server.GradsTempHandle

getCTL() - Method in class org.iges.grads.server.GradsDataInfo

Returns an object containing the information needed for the direct subset mechanism.

getCurrentFileName() - Method in class org.iges.anagram.Log.Rotater

Returns the most recently calculated filename

getDAS(DataHandle) - Method in class org.iges.anagram.Tool

Provides an object representation of the DODS Data Attribute Structure for the specified data object.

getDAS(DataHandle) - Method in class org.iges.grads.server.GradsTool

Provides an object representation of a Data Attribute Structure.

getDAS(DataHandle) - Method in class org.iges.grads.server.GradsDODSModule

Creates a DAS object for the given dataset (which is the Java-DODS encapsulation of a subset request).

getDataFromPath(ClientRequest) - Method in class org.iges.anagram.service.Service

Convenience method for data services, which ensures that the client request contains a usable data handle.

getDataHandles() - Method in interface org.iges.anagram.TempDataHandle

getDataHandles() - Method in class org.iges.grads.server.GradsTempHandle

getDataPath() - Method in class org.iges.anagram.ClientRequest

Returns the catalog data path associated with this request

getDataType() - Method in class org.iges.grads.server.GradsDataInfo

Whether this is a station or gridded dataset.

getDDS(DataHandle, String) - Method in class org.iges.anagram.Tool

Provides an object representation of the DODS Data Descriptor Structure for the specified data object.

getDDS(DataHandle, String) - Method in class org.iges.grads.server.GradsTool

Provides an object representation of a Data Descriptor Structure.

getDDS(DataHandle, String) - Method in class org.iges.grads.server.GradsDODSModule

Creates a constrained DDS object for the given dataset (which is the Java-DODS encapsulation of a subset request).

getDenyMatch(String) - Method in class org.iges.anagram.Privilege

getDependencies() - Method in interface org.iges.anagram.TempDataHandle

A set of data handle names upon which were used to generate this temporary data.

getDependencies() - Method in class org.iges.grads.server.GradsTempHandle

getDescription() - Method in class org.iges.anagram.DataHandle

getDescriptorFile() - Method in class org.iges.grads.server.GradsDataInfo

Location on disk of a GrADS descriptor file (which may be only a dummy) describing this dataset.

getDimData(String) - Method in class org.iges.grads.server.GradsGridSubsetter.DataMethods

Returns a disk file containing the world coordinates for the spatial dimension and grid range specified.

getDimensions() - Method in class org.iges.grads.server.dap.GradsGrid

Returns a list of dimension vectors for this grid.

getDir(String, DirHandle) - Method in class org.iges.anagram.Catalog

Used by add, remove, get, and getParent to look up datasets

getDocURL() - Method in class org.iges.grads.server.GradsDataInfo

A URL pointing to additional documentation for this dataset, or null if none

getDODSName() - Method in class org.iges.grads.server.GradsDataInfo

The identifier to be used in generating the DDS for this data object.

getEntries(boolean) - Method in class org.iges.anagram.DirHandle

Returns a Map containing all entries in this directory.

getFactory() - Static method in class org.iges.grads.server.dap.GradsServerFactory

Returns a unique instance of this class

getFilterName() - Method in class org.iges.anagram.filter.OverloadFilter

getFilterName() - Method in class org.iges.anagram.filter.Filter

The name of this filter.

getFilterName() - Method in class org.iges.anagram.filter.DispatchFilter

getFilterName() - Method in class org.iges.anagram.filter.AnalysisFilter

getFilterName() - Method in class org.iges.anagram.filter.AbuseFilter

getFullURL() - Method in class org.iges.anagram.ClientRequest

Returns the complete URL of this request including query string

getGradsArgument() - Method in class org.iges.grads.server.GradsDataInfo

The argument passed to GrADS to open this dataset (a filename or url).

getGradsBinaryType() - Method in class org.iges.grads.server.GradsDataInfo

The type of GrADS binary that should be used to open this dataset.

getHandle() - Method in class org.iges.anagram.ClientRequest

Returns the catalog entry associated with this request, if any

getHistoryString() - Method in class org.iges.grads.server.GradsExtracter

getHome() - Method in class org.iges.anagram.Server

Returns the home directory of the server installation.

getHttpRequest() - Method in class org.iges.anagram.ClientRequest

Returns the servlet request object associated with this request

getHttpResponse() - Method in class org.iges.anagram.ClientRequest

Returns the servlet response object associated with this request

getImplHomePage() - Method in class org.iges.anagram.Server

Returns a URL where more information can be obtained about this Anagram implementation, so that it can be included in web pages and user messages.

getImplName() - Method in class org.iges.anagram.Server

Returns the descriptive name of this Anagram implementation, so that it can be included in web pages and user messages.

getImplVersion() - Method in class org.iges.anagram.Server

Returns the version number for this Anagram implementation, so that it can be included in web pages and user messages.

getLastConfigTime() - Method in class org.iges.anagram.Server

Returns the last time that the server's configuration changed, or else the time that the server was created.

getLevel(String) - Static method in class org.iges.anagram.Log

Translates a given log level name into an integer constant.

getLevelsUpTo(int) - Method in class org.iges.grads.server.GradsDataInfo.CTL

Returns the sum of the vertical levels for variables prior to the specified index

getLocked(String) - Method in class org.iges.anagram.Catalog

Retrieves the handle, if any, that maches the given pathname.

getLog() - Method in class org.iges.anagram.Server

Returns a handle to the logger

getMapper() - Method in class org.iges.anagram.Server

Returns a handle to the service mapper

getMessage() - Method in class org.iges.util.ChainedException

getMessage() - Method in class org.iges.anagram.ConfigException

getMessage(long) - Method in class org.iges.anagram.filter.AbuseFilter.HitLimiter

getMetadataAttributes() - Method in class org.iges.grads.server.GradsDataInfo

getMetadataFilters() - Method in class org.iges.grads.server.GradsDataInfo

getMode(String) - Static method in class org.iges.anagram.Log

Translates a given log level name into an integer constant.

getModule() - Method in class org.iges.anagram.ModuleException

Returns the module that generated this exception

getModuleID() - Method in class org.iges.anagram.Store

getModuleID() - Method in class org.iges.anagram.Server

The module ID of the server is determined by the Anagram property "anagram.impl".

getModuleID() - Method in class org.iges.anagram.PrivilegeMgr

getModuleID() - Method in interface org.iges.anagram.Module

Returns an ID for this module.

getModuleID() - Method in class org.iges.anagram.Mapper

getModuleID() - Method in class org.iges.anagram.Log

getModuleID() - Method in class org.iges.anagram.Catalog

getModuleID() - Method in class org.iges.anagram.AnagramServlet

getModuleID() - Method in class org.iges.anagram.AbstractModule

getModuleID() - Method in class org.iges.anagram.service.Service

getModuleID() - Method in class org.iges.anagram.filter.Filter

getModuleID() - Method in class org.iges.grads.server.GradsUploadModule

getModuleID() - Method in class org.iges.grads.server.GradsUpdateModule

getModuleID() - Method in class org.iges.grads.server.GradsTool

getModuleID() - Method in class org.iges.grads.server.GradsTaskModule

getModuleID() - Method in class org.iges.grads.server.GradsSubsetter

getModuleID() - Method in class org.iges.grads.server.GradsImportModule

getModuleID() - Method in class org.iges.grads.server.GradsExtracter

getModuleID() - Method in class org.iges.grads.server.GradsDODSModule

getModuleID() - Method in class org.iges.grads.server.GradsAnalysisModule

getModuleName() - Method in class org.iges.anagram.Server

Because the server is the top-level module, its module name is identical to its module ID.

getModuleName() - Method in interface org.iges.anagram.Module

Returns the complete name of the module, including parents.

getModuleName() - Method in class org.iges.anagram.Log

getModuleName() - Method in class org.iges.anagram.AnagramServlet

Same as in AbstractModule.

getModuleName() - Method in class org.iges.anagram.AbstractModule

Returns the full name of this module, including parent modules

getName() - Method in class org.iges.anagram.Setting

Returns the name of this XML tag

getName() - Method in class org.iges.anagram.Privilege

Returns the name of this privilege set.

getName() - Method in class org.iges.anagram.Handle

Returns the portion of the entry's complete name that follows the final '/'.

getNumAttribute(String, long) - Method in class org.iges.anagram.Setting

Returns the numerical value of the named attribute of this tag.

getNumAttribute(String, long) - Method in class org.iges.anagram.Privilege

getOutput() - Method in class org.iges.grads.server.Task

Returns a string version of the command's console output

getParent() - Method in class org.iges.anagram.Privilege

getParent(Handle) - Method in class org.iges.anagram.Catalog

Returns the parent of the handle given.

getPrivilege() - Method in class org.iges.anagram.ClientRequest

Returns the privilege set associated with this request

getPrivilege(HttpServletRequest) - Method in class org.iges.anagram.PrivilegeMgr

Returns the privilege set associated with the given HTTP servlet request

getPrivilegeMgr() - Method in class org.iges.anagram.Server

Returns a handle to the privilege manager

getProperty(ServletConfig, String, String) - Method in class org.iges.anagram.Server

getServerName() - Method in class org.iges.anagram.Server

Returns the descriptive name of this server instance.

getService() - Method in class org.iges.anagram.ClientRequest

Returns the service associated with this request, if any

getServiceName() - Method in class org.iges.anagram.ClientRequest

Returns the name of the service associated with this request

getServiceName() - Method in class org.iges.anagram.service.XMLCatalogService

getServiceName() - Method in class org.iges.anagram.service.WebErrorService

getServiceName() - Method in class org.iges.anagram.service.UploadService

getServiceName() - Method in class org.iges.anagram.service.Service

Returns the name of this service.

getServiceName() - Method in class org.iges.anagram.service.InfoService

getServiceName() - Method in class org.iges.anagram.service.HelpService

getServiceName() - Method in class org.iges.anagram.service.DODSErrorService

getServiceName() - Method in class org.iges.anagram.service.DirectoryService

getServiceName() - Method in class org.iges.anagram.service.DDSService

getServiceName() - Method in class org.iges.anagram.service.DASService

getServiceName() - Method in class org.iges.anagram.service.BinaryDataService

getServiceName() - Method in class org.iges.anagram.service.ASCIIDataService

getServiceName() - Method in class org.iges.anagram.service.AdminService

getServlet() - Method in class org.iges.anagram.Server

Returns a handle to the servlet

getSiteHomePage(String) - Method in class org.iges.anagram.Server

Returns the home page for this server instance.

getSize() - Method in class org.iges.util.Bounds.Grid

Calculates the number of points in the grid (not size in bytes)

getSourceFile() - Method in class org.iges.grads.server.GradsDataInfo

Location of the dataset, if stored on disk

getStorageSize() - Method in interface org.iges.anagram.TempDataHandle

getStorageSize() - Method in class org.iges.grads.server.GradsTempHandle

getStore() - Method in class org.iges.anagram.Server

Returns a handle to the temporary storage interface

getSubset(String, Bounds.Grid) - Method in class org.iges.grads.server.GradsGridSubsetter.DataMethods

Generates a disk file containing a subset of the dataset specified by the variable and bounds given, to be streamed by GradsArray.

getSubSettings() - Method in class org.iges.anagram.Setting

Returns a list of Setting objects representing all sub-tags of this XML tag.

getSubSettings(String) - Method in class org.iges.anagram.Setting

Returns a list of Setting objects representing all sub-tags of this XML tag with the given name.

getSynch() - Method in class org.iges.anagram.Server

Used to synchronize operations on the entire server.

getSynch() - Method in class org.iges.anagram.Handle

Allows multiple threads to synchronize operations on this handle.

getTask() - Method in class org.iges.grads.server.GradsTool

Used internally.

getTimeLimit() - Method in class org.iges.grads.server.GradsTaskModule

getTitle() - Method in class org.iges.grads.server.GradsDataInfo

The title of the dataset.

getTool() - Method in class org.iges.anagram.Server

Returns a handle to the data tool

getToolInfo() - Method in class org.iges.anagram.DataHandle

getUniqueSubSetting(String) - Method in class org.iges.anagram.Setting

Returns the sub-tag of this XML tag with the given name.

getURL() - Method in class org.iges.anagram.ClientRequest

Returns the URL of this request, minus the query string

getUserDAS() - Method in class org.iges.grads.server.GradsDataInfo

Location on disk of the supplemental DAS, or null if none

getVarIndex(String) - Method in class org.iges.grads.server.GradsDataInfo.CTL

Returns the index of a given variable in the dataset

getVarLevelCount(int) - Method in class org.iges.grads.server.GradsDataInfo.CTL

Returns the number of levels for a given variable in the dataset.

getXML() - Method in class org.iges.anagram.Setting

Returns the DOM interface to the XML tag associated with this Setting.

globalOnly - Variable in class org.iges.grads.server.MetadataFilter

GOT_DATA - Static variable in class org.iges.grads.server.dap.GradsSequence

GradsAnalysisModule - class org.iges.grads.server.GradsAnalysisModule.

Runs a GrADS analysis task and returns a handle to the results.

GradsAnalysisModule.ParsedExpression - class org.iges.grads.server.GradsAnalysisModule.ParsedExpression.

GradsAnalysisModule.ParsedExpression(String, Privilege) - Constructor for class org.iges.grads.server.GradsAnalysisModule.ParsedExpression

GradsAnalysisModule(GradsTool) - Constructor for class org.iges.grads.server.GradsAnalysisModule

gradsArgument - Variable in class org.iges.grads.server.GradsDataInfo

GradsArray - class org.iges.grads.server.dap.GradsArray.

An implementation of the DODS Array data type.

GradsArray() - Constructor for class org.iges.grads.server.dap.GradsArray

Constructs a new GradsArray.

GradsArray(String) - Constructor for class org.iges.grads.server.dap.GradsArray

Constructs a new GradsArray with name n.

gradsBinaries - Variable in class org.iges.grads.server.GradsTaskModule

gradsBinary - Variable in class org.iges.grads.server.GradsTaskModule

gradsBinaryType - Variable in class org.iges.grads.server.GradsDataInfo

GradsDataInfo - class org.iges.grads.server.GradsDataInfo.

Information used by the GradsTool to provide access to a given data object, stored as the ToolInfo object in DataHandles.

GradsDataInfo.CTL - class org.iges.grads.server.GradsDataInfo.CTL.

Holds the information needed for the direct subset mechanism.

GradsDataInfo(String, int, String, File, File, File, String, String, boolean, List, List) - Constructor for class org.iges.grads.server.GradsDataInfo

Creates an object containing the necessary info to access and serve a GrADS dataset.

gradsDateFormats - Static variable in class org.iges.util.Range

GradsDODSModule - class org.iges.grads.server.GradsDODSModule.

Provides DODS metadata and subsets for GrADS data objects.

GradsDODSModule(GradsTool) - Constructor for class org.iges.grads.server.GradsDODSModule

GradsExtracter - class org.iges.grads.server.GradsExtracter.

Shared interface for modules that extract and cache metadata for GrADS datasets.

GradsExtracter() - Constructor for class org.iges.grads.server.GradsExtracter

GradsGrid - class org.iges.grads.server.dap.GradsGrid.

Represents a server-side Grid object for the GrADS-DODS server.

GradsGrid() - Constructor for class org.iges.grads.server.dap.GradsGrid

Constructs a new GradsGrid.

GradsGrid(String) - Constructor for class org.iges.grads.server.dap.GradsGrid

Constructs a new GradsGrid with name n.

GradsGridExtracter - class org.iges.grads.server.GradsGridExtracter.

Extracts and caches metadata for a gridded GrADS dataset.

GradsGridExtracter() - Constructor for class org.iges.grads.server.GradsGridExtracter

GradsGridSubsetter - class org.iges.grads.server.GradsGridSubsetter.

Streams subsets from gridded datasets.

GradsGridSubsetter.DataMethods - class org.iges.grads.server.GradsGridSubsetter.DataMethods.

This is a wrapper class for a DataHandle, which implements operations that are dependent on configuration settings specific to the subset module, e.g., buffer size.

GradsGridSubsetter.Serializer - class org.iges.grads.server.GradsGridSubsetter.Serializer.

A one-time-use class which serializes a particular data variable, with a particular set of bounds, to a particular stream.

GradsGridSubsetter.Serializer.Dim - class org.iges.grads.server.GradsGridSubsetter.Serializer.Dim.

Keeps track of useful numbers for stride calculations

GradsGridSubsetter.Serializer.Dim(DArrayDimension, int) - Constructor for class org.iges.grads.server.GradsGridSubsetter.Serializer.Dim

GradsGridSubsetter.Serializer(DArray, OutputStream, boolean, GradsGridSubsetter.DataMethods, long) - Constructor for class org.iges.grads.server.GradsGridSubsetter.Serializer

Creates a new Serializer for the variable and stream given.

GradsGridSubsetter() - Constructor for class org.iges.grads.server.GradsGridSubsetter

GradsImportModule - class org.iges.grads.server.GradsImportModule.

Creates data handles for GrADS datasets specified by XML configuration tags.

GradsImportModule(GradsTool) - Constructor for class org.iges.grads.server.GradsImportModule

gradsInfo - Variable in class org.iges.grads.server.GradsExtracter

GradsSequence - class org.iges.grads.server.dap.GradsSequence.

An implementation of the DODS Sequence data type.

GradsSequence() - Constructor for class org.iges.grads.server.dap.GradsSequence

Constructs a new GradsSequence.

GradsSequence(String) - Constructor for class org.iges.grads.server.dap.GradsSequence

Constructs a new GradsSequence with name n.

GradsServerFactory - class org.iges.grads.server.dap.GradsServerFactory.

A factory for GrADS-DODS server-side data objects The only supported types are Float32, Float64, String, Sequence, Grid, and Array.

GradsServerFactory() - Constructor for class org.iges.grads.server.dap.GradsServerFactory

GradsServerMethods - interface org.iges.grads.server.dap.GradsServerMethods.

A holdover from the previous GDS version.

GradsStnExtracter - class org.iges.grads.server.GradsStnExtracter.

Extracts and caches metadata for GrADS station datasets.

GradsStnExtracter() - Constructor for class org.iges.grads.server.GradsStnExtracter

GradsStnSubsetter - class org.iges.grads.server.GradsStnSubsetter.

Handles subsetting of GrADS station datasets.

GradsStnSubsetter() - Constructor for class org.iges.grads.server.GradsStnSubsetter

GradsSubsetter - class org.iges.grads.server.GradsSubsetter.

Generic interface for modules that handle subsetting of GrADS datasets.

GradsSubsetter() - Constructor for class org.iges.grads.server.GradsSubsetter

GradsTaskModule - class org.iges.grads.server.GradsTaskModule.

This module handles invoking GrADS as an external process.

GradsTaskModule(GradsTool) - Constructor for class org.iges.grads.server.GradsTaskModule

GradsTempHandle - class org.iges.grads.server.GradsTempHandle.

Implementation of the TempDataHandle interface for GrADS datasets.

GradsTempHandle(String, GradsDataInfo, File) - Constructor for class org.iges.grads.server.GradsTempHandle

GradsTempHandle(String, String, GradsDataInfo, File, Set) - Constructor for class org.iges.grads.server.GradsTempHandle

GradsTool - class org.iges.grads.server.GradsTool.

GrADS-based implementation of the Anagram framework.

GradsTool() - Constructor for class org.iges.grads.server.GradsTool

GradsUpdateModule - class org.iges.grads.server.GradsUpdateModule.

Updates a data handle to be in synch with the actual data source.

GradsUpdateModule(GradsTool) - Constructor for class org.iges.grads.server.GradsUpdateModule

GradsUploadModule - class org.iges.grads.server.GradsUploadModule.

Handles an incoming dataset upload stream.

GradsUploadModule(GradsTool) - Constructor for class org.iges.grads.server.GradsUploadModule

GRID - Static variable in class org.iges.grads.server.GradsDataInfo

gridSubsetter - Variable in class org.iges.grads.server.GradsDODSModule

H

handle - Variable in class org.iges.anagram.ClientRequest

Handle - class org.iges.anagram.Handle.

The base class for all Catalog entries.

handle(ClientRequest) - Method in class org.iges.anagram.service.XMLCatalogService

handle(ClientRequest) - Method in class org.iges.anagram.service.UploadService

handle(ClientRequest) - Method in class org.iges.anagram.service.Service

Performs the service provided by this module.

handle(ClientRequest) - Method in class org.iges.anagram.service.InfoService

handle(ClientRequest) - Method in class org.iges.anagram.service.HelpService

handle(ClientRequest) - Method in class org.iges.anagram.service.ErrorService

Not used by an error service

handle(ClientRequest) - Method in class org.iges.anagram.service.DirectoryService

handle(ClientRequest) - Method in class org.iges.anagram.service.DDSService

handle(ClientRequest) - Method in class org.iges.anagram.service.DASService

handle(ClientRequest) - Method in class org.iges.anagram.service.BinaryDataService

handle(ClientRequest) - Method in class org.iges.anagram.service.ASCIIDataService

Handles a request from the main dispatching servlet

handle(ClientRequest) - Method in class org.iges.anagram.service.AdminService

handle(ClientRequest) - Method in class org.iges.anagram.filter.Filter

Handles a client request.

handle(ClientRequest, ModuleException) - Method in class org.iges.anagram.service.ErrorService

Handles "known" errors, i.e.

Handle(String) - Constructor for class org.iges.anagram.Handle

handleUnexpected(ClientRequest, Throwable) - Method in class org.iges.anagram.service.ErrorService

Handles "unexpected" errors, i.e.

HDF - Static variable in class org.iges.grads.server.GradsDataInfo

HelpService - class org.iges.anagram.service.HelpService.

Provides an HTML page with links to information about the server's contents and how to use it.

HelpService() - Constructor for class org.iges.anagram.service.HelpService

httpRequest - Variable in class org.iges.anagram.ClientRequest

httpResponse - Variable in class org.iges.anagram.ClientRequest

I

implClass - Variable in class org.iges.anagram.Server

implHome - Variable in class org.iges.anagram.Server

implLongName - Variable in class org.iges.anagram.Server

implName - Variable in class org.iges.anagram.Server

implVersion - Variable in class org.iges.anagram.Server

importer - Variable in class org.iges.grads.server.GradsTool

in - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

info - Variable in class org.iges.grads.server.GradsTempHandle

info - Variable in class org.iges.grads.server.GradsGridSubsetter.DataMethods

INFO - Static variable in class org.iges.anagram.Log

Level of log output

info(Module, String) - Method in class org.iges.anagram.Log

Writes an info message to the current log output.

info(String) - Method in class org.iges.anagram.AbstractModule

Convenience method - sends an info message to the logger

InfoService - class org.iges.anagram.service.InfoService.

Provides an HTML summary of a data object

InfoService() - Constructor for class org.iges.anagram.service.InfoService

init(Server, Module) - Method in class org.iges.anagram.Server

Does nothing for Server

init(Server, Module) - Method in interface org.iges.anagram.Module

Initializes the module.

init(Server, Module) - Method in class org.iges.anagram.Log

init(Server, Module) - Method in class org.iges.anagram.AnagramServlet

init(Server, Module) - Method in class org.iges.anagram.AbstractModule

Saves references to the server, log module, and parent module, and constructs the complete module name.

init(Server, Module) - Method in class org.iges.grads.server.GradsTool

init(ServletConfig) - Method in class org.iges.anagram.AnagramServlet

Called when the servlet is first loaded.

inputFile - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

ipRanges - Variable in class org.iges.anagram.PrivilegeMgr

isAvailable() - Method in class org.iges.anagram.DataHandle

isBlocked(long, long) - Method in class org.iges.anagram.filter.AbuseFilter.HitLimiter

Checks whether a block is in force

isDirectSubset() - Method in class org.iges.grads.server.GradsDataInfo

Indicates whether server should attempt to read data directly from the datafile, without invoking GrADS

isEnabled() - Method in class org.iges.anagram.service.Service

Returns whether this service should be invoked or not.

isEnabled() - Method in class org.iges.anagram.filter.Filter

Indicates whether this filter is enabled.

isLocked() - Method in interface org.iges.util.Lock

isLocked() - Method in class org.iges.util.ExclusiveLock

isLockedExclusive() - Method in class org.iges.util.ExclusiveLock

isStale(long, long) - Method in class org.iges.anagram.filter.AbuseFilter.HitLimiter

Indicates whether this limiter has had a hit recently.

isSubset - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

isVarVertical(int) - Method in class org.iges.grads.server.GradsDataInfo.CTL

Returns true if the specified variable has vertical levels

L

lastConfigTime - Variable in class org.iges.anagram.Server

lat - Variable in class org.iges.util.Bounds.World

lev - Variable in class org.iges.util.Bounds.World

LEVEL_NAME - Static variable in class org.iges.anagram.Log

Name associated with each level.

limit - Variable in class org.iges.anagram.filter.OverloadFilter

load() - Method in class org.iges.grads.server.GradsStnExtracter

Reads CTL file for dataset into internal structures

load() - Method in class org.iges.grads.server.GradsGridExtracter

load() - Method in class org.iges.grads.server.GradsExtracter

Reads CTL file for dataset into internal structures

loadBlock(String) - Method in class org.iges.anagram.filter.AbuseFilter

loadCatalogFromStore() - Method in class org.iges.anagram.Catalog

loadConfig() - Method in class org.iges.anagram.Server

loadDAS(DataHandle) - Method in class org.iges.grads.server.GradsDODSModule

loadDDS(DataHandle) - Method in class org.iges.grads.server.GradsDODSModule

loadDimValues(String, int) - Method in class org.iges.grads.server.GradsGridExtracter

Invokes GrADS to print a complete list of values for a given dimension, then parses the values into an array

loadEntries(List) - Method in class org.iges.anagram.Catalog

loadMetadata() - Method in class org.iges.grads.server.GradsExtracter

loadTempEntriesFromStore() - Method in class org.iges.anagram.Catalog

Lock - interface org.iges.util.Lock.

A generalized representation of the thread-lock concept.

lock() - Method in interface org.iges.util.Lock

Obtains this lock for the current thread, blocking until the lock is available.

lock() - Method in class org.iges.util.ExclusiveLock

Obtains a non-exclusive lock for the current thread, blocking until the lock is available.

lockExclusive() - Method in class org.iges.util.ExclusiveLock

Obtains an exclusive lock for the current thread, blocking until the lock is available.

locks - Variable in class org.iges.util.ExclusiveLock

log - Variable in class org.iges.anagram.Server

log - Variable in class org.iges.anagram.AnagramServlet

log - Variable in class org.iges.anagram.AbstractModule

Reference to the log module

Log - class org.iges.anagram.Log.

Provides logging services for the server.

Log.Rotater - class org.iges.anagram.Log.Rotater.

Produces rotating filenames either monthly, weekly, or daily.

Log.Rotater(String) - Constructor for class org.iges.anagram.Log.Rotater

Accepts either "month", "week", or "day".

Log() - Constructor for class org.iges.anagram.Log

log(int, Module, String) - Method in class org.iges.anagram.Log

Writes a message to the current log output.

log(int, String) - Method in class org.iges.anagram.Server

logFileName - Variable in class org.iges.anagram.Log

logWriter - Variable in class org.iges.anagram.Log

lon - Variable in class org.iges.util.Bounds.World

M

makeDescriptorFile(String, String, int) - Method in class org.iges.grads.server.GradsImportModule

map(HttpServletRequest, HttpServletResponse) - Method in class org.iges.anagram.Mapper

Builds a ClientRequest object from the servlet request provided.

mapByExtension(HttpServletRequest, HttpServletResponse, String, Privilege) - Method in class org.iges.anagram.Mapper

mapper - Variable in class org.iges.anagram.Server

Mapper - class org.iges.anagram.Mapper.

Maps incoming servlet requests to services and privilege levels, and returns completed ClientRequest objects.

Mapper() - Constructor for class org.iges.anagram.Mapper

mapToHandle(HttpServletRequest, HttpServletResponse, Handle, Privilege) - Method in class org.iges.anagram.Mapper

match(MetadataAttribute) - Method in class org.iges.grads.server.MetadataFilter

Returns true if the variable name and attribute name match the prefixes, suffixes, and names given.

max - Variable in class org.iges.util.Range.Double

max - Variable in class org.iges.util.Range.Long

max - Variable in class org.iges.util.Range.Date

maxLoad - Variable in class org.iges.anagram.filter.OverloadFilter

maxString - Variable in class org.iges.util.Range.Date

metadata - Variable in class org.iges.grads.server.GradsExtracter

MetadataAttribute - class org.iges.grads.server.MetadataAttribute.

Stores a metadata attribute to be added to the DAS document for a dataset.

MetadataAttribute(String, String, String, String) - Constructor for class org.iges.grads.server.MetadataAttribute

Creates a new attribute.

metadataAttributeList - Variable in class org.iges.grads.server.GradsDataInfo

MetadataFilter - class org.iges.grads.server.MetadataFilter.

A filter for whether metadata extracted from a dataset should be sent to the client.

MetadataFilter(String, String, String, boolean, String, String, String, boolean) - Constructor for class org.iges.grads.server.MetadataFilter

Creates a filter.

metadataFilterList - Variable in class org.iges.grads.server.GradsDataInfo

min - Variable in class org.iges.util.Range.Double

min - Variable in class org.iges.util.Range.Long

min - Variable in class org.iges.util.Range.Date

minString - Variable in class org.iges.util.Range.Date

mkdirs(File) - Method in class org.iges.anagram.Store

mode - Variable in class org.iges.anagram.Log

MODE_NAME - Static variable in class org.iges.anagram.Log

Name associated with each log mode.

module - Variable in class org.iges.anagram.ModuleException

Module - interface org.iges.anagram.Module.

The fundamental software component in the Anagram framework.

ModuleException - exception org.iges.anagram.ModuleException.

Thrown when a module cannot complete the task it is attempting.

ModuleException(Module, String) - Constructor for class org.iges.anagram.ModuleException

Creates a ModuleException associated with the given module, with the given message.

ModuleException(Module, String, String) - Constructor for class org.iges.anagram.ModuleException

Creates a ModuleException associated with the given module, with the given message, plus a different message that should be returned to the client.

ModuleException(Module, String, Throwable) - Constructor for class org.iges.anagram.ModuleException

Creates a ModuleException associated with the given module, with the given message and cause.

moduleID - Variable in class org.iges.anagram.service.Service

moduleID - Variable in class org.iges.anagram.filter.Filter

moduleName - Variable in class org.iges.anagram.Log

moduleName - Variable in class org.iges.anagram.AnagramServlet

moduleName - Variable in class org.iges.anagram.AbstractModule

Complete name of this module, including parents

moduleSettings - Variable in class org.iges.anagram.Log

N

name - Variable in class org.iges.anagram.Privilege

name - Variable in class org.iges.grads.server.MetadataAttribute

name - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

nameInDDS(String, DDS) - Static method in class org.iges.anagram.service.InfoService

nameIsGlobal(String) - Static method in class org.iges.anagram.service.InfoService

NC - Static variable in class org.iges.grads.server.GradsDataInfo

newDArray() - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DArray.

newDArray(String) - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DArray with name n.

newDFloat32() - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DFloat32.

newDFloat32(String) - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DFloat32 with name n.

newDFloat64() - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DFloat64.

newDFloat64(String) - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DFloat64 with name n.

newDGrid() - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DGrid.

newDGrid(String) - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DGrid with name n.

newDInt32() - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DInt32.

newDInt32(String) - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DInt32 with name n.

newDSequence() - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DSequence.

newDSequence(String) - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DSequence with name n.

newDString() - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DString.

newDString(String) - Method in class org.iges.grads.server.dap.GradsServerFactory

Construct a new DString with name n.

next - Variable in class org.iges.anagram.filter.Filter

NO_MORE_DATA - Static variable in class org.iges.grads.server.dap.GradsSequence

NUM_LEVELS - Static variable in class org.iges.anagram.Log

O

open(String) - Method in class org.iges.anagram.Log

Directs log output to the filename given.

openInput(DArray, GradsGridSubsetter.DataMethods) - Method in class org.iges.grads.server.GradsGridSubsetter.Serializer

Prepares an InputStream containing the data to be streamed

org.iges.anagram - package org.iges.anagram

org.iges.anagram.filter - package org.iges.anagram.filter

org.iges.anagram.service - package org.iges.anagram.service

org.iges.grads.server - package org.iges.grads.server

org.iges.grads.server.dap - package org.iges.grads.server.dap

org.iges.util - package org.iges.util

out - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

outdated(TempDataHandle) - Method in class org.iges.anagram.Catalog

output - Variable in class org.iges.grads.server.Task

outputLevel - Variable in class org.iges.anagram.Server

overlaps(Range.Date) - Method in class org.iges.util.Range.Date

Tests whether this range overlaps the one specified

overlaps(Range.Double) - Method in class org.iges.util.Range.Double

Tests whether this range overlaps the one specified

overlaps(Range.Long) - Method in class org.iges.util.Range.Long

Tests whether this range overlaps the one specified

OverloadFilter - class org.iges.anagram.filter.OverloadFilter.

Tracks the number of simultaneous requests, and blocks those that exceed the server's limit.

OverloadFilter() - Constructor for class org.iges.anagram.filter.OverloadFilter

P

p - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

parent - Variable in class org.iges.anagram.Privilege

parent - Variable in class org.iges.anagram.AbstractModule

Parent of this module

parse(DataHandle, GradsTaskModule, String) - Method in class org.iges.grads.server.GradsExtracter

Extracts metadata for the dataset given, and stores it in a set of temporary files under the prefix given, for use by the request handling modules.

parseBounds(StringTokenizer) - Method in class org.iges.grads.server.GradsAnalysisModule.ParsedExpression

parseDatasetNames(StringTokenizer) - Method in class org.iges.grads.server.GradsAnalysisModule.ParsedExpression

parseDates() - Method in class org.iges.util.Range.Date

parseExpression(StringTokenizer) - Method in class org.iges.grads.server.GradsAnalysisModule.ParsedExpression

parseGradsFormat(String) - Static method in class org.iges.util.Range

Parses a date from (hopefully) any of the various formats used by GrADS into a Java Date object.

parseLevel(Setting) - Method in class org.iges.anagram.Log

Sets flags for what messages should be printed

parseMode(Setting) - Method in class org.iges.anagram.Log

Sets the log mode to console, file, or rotating.

parseModuleSettings(Setting) - Method in class org.iges.anagram.Log

Sets up per-module logging configuration

pos - Variable in class org.iges.anagram.Log

printDim(PrintWriter, String, String, String, String, int) - Method in class org.iges.grads.server.GradsGridExtracter

Helper for writeWebInfo()

printDODSAttributes(PrintWriter, String) - Method in class org.iges.grads.server.GradsExtracter

printFooter(PrintStream, Handle, long, String) - Method in class org.iges.anagram.service.Service

Used to provide a consistent "look and feel" to pages served by the server.

printGradsDate(Date) - Static method in class org.iges.util.Range

printHeader(PrintStream, String, String, Handle, String) - Method in class org.iges.anagram.service.Service

Used to provide a consistent "look and feel" to pages served by the server.

printMem - Variable in class org.iges.anagram.Log

printModule - Variable in class org.iges.anagram.Log

printReply(ClientRequest, String) - Method in class org.iges.anagram.service.AdminService

printStackTrace() - Method in class org.iges.util.ChainedException

Prints the stack trace for the entire chain of exceptions

printStackTrace(PrintStream) - Method in class org.iges.util.ChainedException

Prints the stack trace for the entire chain of exceptions

printStackTrace(PrintWriter) - Method in class org.iges.util.ChainedException

Prints the stack trace for the entire chain of exceptions

Privilege - class org.iges.anagram.Privilege.

An extension of Setting which represents a set of privileges that can be associated with a given request.

Privilege(String, Element) - Constructor for class org.iges.anagram.Privilege

Creates a privilege set with the given name, based on the XML tag provided.

privilegeDocument - Variable in class org.iges.anagram.PrivilegeMgr

privilegeMgr - Variable in class org.iges.anagram.Server

PrivilegeMgr - class org.iges.anagram.PrivilegeMgr.

Manages a hierarchical collection of privilege sets, and assigns them to incoming requests.

PrivilegeMgr() - Constructor for class org.iges.anagram.PrivilegeMgr

privileges - Variable in class org.iges.anagram.PrivilegeMgr

privileges - Variable in class org.iges.anagram.ClientRequest

R

Range - class org.iges.util.Range.

This is actually a container for three similar classes, Range.Double, Range.Long, and Range.Date.

Range.Date - class org.iges.util.Range.Date.

Represents a range of dates.

Range.Date(String, String) - Constructor for class org.iges.util.Range.Date

Creates a new Range.Date from two GrADS format date strings

Range.Double - class org.iges.util.Range.Double.

Represents a range of floating-point numbers.

Range.Double(double, double) - Constructor for class org.iges.util.Range.Double

Creates a new Range.Double

Range.Long - class org.iges.util.Range.Long.

Represents a range of integers.

Range.Long(long, long) - Constructor for class org.iges.util.Range.Long

Creates a new Range.Long

Range() - Constructor for class org.iges.util.Range

read(String, Object) - Method in class org.iges.grads.server.dap.GradsSequence

Dummy implementation

read(String, Object) - Method in class org.iges.grads.server.dap.GradsGrid

Read a value from the named dataset for this variable.

read(String, Object) - Method in class org.iges.grads.server.dap.GradsArray

Just a dummy procedure.

read(String, Object) - Method in class org.iges.grads.server.dap.GenericString

Dummy procedure

read(String, Object) - Method in class org.iges.grads.server.dap.GenericInt32

Dummy procedure

read(String, Object) - Method in class org.iges.grads.server.dap.GenericFloat64

Dummy procedure

read(String, Object) - Method in class org.iges.grads.server.dap.GenericFloat32

Dummy procedure

readDescriptor() - Method in class org.iges.grads.server.GradsDataInfo

Parses the descriptor file for the dataset to determine whether it is a station or gridded dataset, and extract the title.

readTimeDimension(int) - Method in class org.iges.grads.server.GradsStnSubsetter

readVars(DataInputStream) - Method in class org.iges.grads.server.dap.GradsSequence

Deserializes data for each variable in the current sequence (but not any subsequences) using the stream given.

reconfigure() - Method in class org.iges.anagram.Server

Checks the configuration file, and if it has been modified, parses it and reconfigures the entire server to the new settings.

release() - Method in interface org.iges.util.Lock

Releases this lock.

release() - Method in class org.iges.util.ExclusiveLock

Releases the current thread's lock.

releaseSources(List) - Method in class org.iges.grads.server.GradsAnalysisModule

reload(DataHandle) - Method in class org.iges.grads.server.GradsUpdateModule

Brings internal structures in a DataHandle up-to-date with respect to the data files.

removeHandle(Handle) - Method in class org.iges.anagram.Catalog

Removes a handle, removing the parent dir if appropriate.

removeTemp(String, TempDataHandle) - Method in class org.iges.anagram.Catalog

replace(String, String, String) - Static method in class org.iges.util.Strings

resetCount() - Static method in class org.iges.grads.server.dap.GenericString

resetCount() - Static method in class org.iges.grads.server.dap.GenericInt32

resolve(Module, String) - Method in class org.iges.anagram.Store

resolve(String, String) - Static method in class org.iges.util.FileResolver

Resolves a filename relative to a base path, similar to the way a URL is resolved relative to the server's base URL.

root - Variable in class org.iges.anagram.Catalog

ROTATE_MODE - Static variable in class org.iges.anagram.Log

Mode for log output

rotater - Variable in class org.iges.anagram.Log

run() - Method in class org.iges.grads.server.Task

Executes the external process, returning when it is finished or when it exceeds the time limit specified in the constructor.

run(long) - Method in class org.iges.grads.server.Task

Executes the external process, returning when it is finished or when it exceeds the time limit specified.

S

saveBlock(String, AbuseFilter.HitLimiter) - Method in class org.iges.anagram.filter.AbuseFilter

saveCatalogToStore() - Method in class org.iges.anagram.Catalog

saveDimsForDirectSubset() - Method in class org.iges.grads.server.GradsGridExtracter

Creates an in-memory object for use by the direct-subsetting feature, which reads directly from IEEE binary datafiles instead of invoking GrADS.

saveTempEntriesToStore() - Method in class org.iges.anagram.Catalog

scriptDir - Variable in class org.iges.grads.server.GradsTaskModule

sendASCII - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

sendDODSError(PrintWriter, String) - Method in class org.iges.anagram.service.DODSErrorService

sendErrorHTML(PrintStream, String, String) - Method in class org.iges.anagram.service.WebErrorService

sendErrorMsg(ClientRequest, String) - Method in class org.iges.anagram.service.WebErrorService

sendErrorMsg(ClientRequest, String) - Method in class org.iges.anagram.service.ErrorService

Sends the message provided in a format defined by the ErrorService implementation.

sendErrorMsg(ClientRequest, String) - Method in class org.iges.anagram.service.DODSErrorService

sendErrorText(PrintStream, ClientRequest, String) - Method in class org.iges.anagram.service.WebErrorService

sendIfMatch - Variable in class org.iges.grads.server.MetadataFilter

sendUnexpectedErrorMsg(ClientRequest, String) - Method in class org.iges.anagram.service.WebErrorService

sendUnexpectedErrorMsg(ClientRequest, String) - Method in class org.iges.anagram.service.ErrorService

Sends the "unexpected error" message provided in a format defined by the ErrorService implementation.

sendUnexpectedErrorMsg(ClientRequest, String) - Method in class org.iges.anagram.service.DODSErrorService

sendUnexpectedHTML(PrintStream, ClientRequest, String) - Method in class org.iges.anagram.service.WebErrorService

serialize() - Method in class org.iges.grads.server.GradsGridSubsetter.Serializer

Writes data from a properly prepared InputStream to the OutputStream associated with this Serializer

serialize(String, DataOutputStream, CEEvaluator, Object, boolean) - Method in interface org.iges.grads.server.dap.GradsServerMethods

Works similarly to the serialize() method in the dods.dap.Server.ServerMethods interface, but can send either ASCII data or a binary stream.

serialize(String, DataOutputStream, CEEvaluator, Object, boolean) - Method in class org.iges.grads.server.dap.GradsSequence

Writes the entire contents of the Sequence to the output stream provided, in either binary or ASCII format.

server - Variable in class org.iges.anagram.Log

server - Variable in class org.iges.anagram.AnagramServlet

server - Variable in class org.iges.anagram.AbstractModule

Reference to the top-level module

Server - class org.iges.anagram.Server.

The top-level module of the Anagram framework.

Server(AnagramServlet, ServletConfig) - Constructor for class org.iges.anagram.Server

Creates a new instance of the Anagram framework connected to the servlet specified .

serverHome - Variable in class org.iges.anagram.Server

serverName - Variable in class org.iges.anagram.Server

service - Variable in class org.iges.anagram.ClientRequest

Service - class org.iges.anagram.service.Service.

A handler for a particular type of client request.

Service() - Constructor for class org.iges.anagram.service.Service

serviceName - Variable in class org.iges.anagram.ClientRequest

services - Variable in class org.iges.anagram.Mapper

servlet - Variable in class org.iges.anagram.Server

setAvailable(boolean) - Method in class org.iges.anagram.DataHandle

Set the availability of this dataset.

setBufferSize(int) - Method in class org.iges.grads.server.GradsSubsetter

setCTL(int, int, int, int, List, List) - Method in class org.iges.grads.server.GradsDataInfo

Stores the information needed for the direct subset mechanism.

setDefaultPrivilege(Setting) - Method in class org.iges.anagram.PrivilegeMgr

setDescription(String) - Method in class org.iges.anagram.DataHandle

Changes the description of this data object.

setEnabled(boolean) - Method in class org.iges.anagram.service.Service

Sets the enabled property of this service.

setEnabled(boolean) - Method in class org.iges.anagram.filter.Filter

Sets whether this filter is enabled

setHandle(Handle) - Method in class org.iges.anagram.ClientRequest

Sets the catalog entry associated with this request

setHeaders(ClientRequest) - Method in class org.iges.anagram.service.DODSErrorService

setNext(Filter) - Method in class org.iges.anagram.filter.Filter

Sets the filter that this filter should pass requests to

setting - Variable in class org.iges.anagram.ConfigException

Setting - class org.iges.anagram.Setting.

An encapsulation of XML tag data from the server's configuration file.

Setting(Element) - Constructor for class org.iges.anagram.Setting

Creates a Setting object from the given XML tag.

Setting(String, Document) - Constructor for class org.iges.anagram.Setting

Creates a Setting object from the top-level tag of the given XML document.

setTool(GradsTool) - Method in class org.iges.grads.server.GradsSubsetter

setToolInfo(Object) - Method in class org.iges.anagram.DataHandle

Changes the tool info object.

shouldInclude(MetadataAttribute) - Method in class org.iges.grads.server.MetadataFilter

shouldRemove(MetadataAttribute) - Method in class org.iges.grads.server.MetadataFilter

SILENT - Static variable in class org.iges.anagram.Log

Level of log output

siteHome - Variable in class org.iges.anagram.Server

size() - Method in class org.iges.util.Range.Long

Returns the number of integers contained in this range

skipFully(InputStream, long) - Method in class org.iges.grads.server.GradsGridSubsetter.Serializer

Wrapper for the InputStream.skip() method, that keeps calling skip() until the requested number of bytes are in fact skipped.

sortPathTags(String) - Method in class org.iges.anagram.Privilege

sourceFile - Variable in class org.iges.grads.server.GradsDataInfo

spool(InputStream, OutputStream) - Static method in class org.iges.util.Spooler

Spools byte data from an InputStream to an OutputStream until the InputStream is exhausted.

spool(InputStream, OutputStream, byte[]) - Static method in class org.iges.util.Spooler

Spools byte data from an InputStream to an OutputStream until the InputStream is exhausted.

spool(long, InputStream, OutputStream, byte[]) - Static method in class org.iges.util.Spooler

Spools a fixed quantity of byte data from an InputStream to an OutputStream.

spool(Reader, Writer) - Static method in class org.iges.util.Spooler

Spools character data from a Reader to a Writer until the Reader is exhausted.

spool(Reader, Writer, char[]) - Static method in class org.iges.util.Spooler

Spools character data from a Reader to a Writer until the Reader is exhausted.

Spooler - class org.iges.util.Spooler.

A collection of methods that efficiently spool data from a finite-length source to a sink.

Spooler() - Constructor for class org.iges.util.Spooler

START_OF_INSTANCE - Static variable in class org.iges.grads.server.dap.GradsSequence

startHTML(ClientRequest) - Method in class org.iges.anagram.service.Service

Convenience method that opens the response stream to the client and sets the content type to HTML.

startLog(Setting) - Method in class org.iges.anagram.Server

startTime - Variable in class org.iges.anagram.Server

STN - Static variable in class org.iges.grads.server.GradsDataInfo

stnSubsetter - Variable in class org.iges.grads.server.GradsDODSModule

storagePrefix - Variable in class org.iges.grads.server.GradsExtracter

store - Variable in class org.iges.anagram.Server

store - Variable in class org.iges.grads.server.GradsImportModule

store - Variable in class org.iges.grads.server.GradsDODSModule

Store - class org.iges.anagram.Store.

Provides a convenient access mechanism for temporary disk storage.

Store() - Constructor for class org.iges.anagram.Store

Strings - class org.iges.util.Strings.

Strings() - Constructor for class org.iges.util.Strings

subset(DataHandle, CEEvaluator, long, boolean, OutputStream) - Method in class org.iges.grads.server.GradsSubsetter

Streams a subset to the output stream given, using the CEEvaluator given.

subset(DataHandle, CEEvaluator, long, boolean, OutputStream) - Method in class org.iges.grads.server.GradsStnSubsetter

subset(DataHandle, CEEvaluator, long, boolean, OutputStream) - Method in class org.iges.grads.server.GradsGridSubsetter

summary - Variable in class org.iges.anagram.ClientRequest

synch - Variable in class org.iges.anagram.Server

synch - Variable in class org.iges.anagram.Handle

synch - Variable in class org.iges.anagram.Catalog

T

t - Variable in class org.iges.util.Bounds.Grid

task - Variable in class org.iges.grads.server.GradsTool

Task - class org.iges.grads.server.Task.

A wrapper for invoking an external process.

task(int, String, String[]) - Method in class org.iges.grads.server.GradsTaskModule

Creates a Task object that will run a GrADS script.

Task(String[], String[], File, long) - Constructor for class org.iges.grads.server.Task

Sets up an external process.

tasker - Variable in class org.iges.grads.server.GradsExtracter

TEMP_ENTRY_FILE - Static variable in class org.iges.anagram.Catalog

tempAgeLimit - Variable in class org.iges.anagram.Catalog

TempDataHandle - interface org.iges.anagram.TempDataHandle.

A handle used by the catalog module to manage temporary data.

tempDeleteQueue - Variable in class org.iges.anagram.Catalog

tempEntries - Variable in class org.iges.anagram.Catalog

tempEntryLimit - Variable in class org.iges.anagram.Catalog

tempStorage - Variable in class org.iges.anagram.Catalog

tempStorageLimit - Variable in class org.iges.anagram.Catalog

time - Variable in class org.iges.util.Bounds.World

timeIntervalFreq - Static variable in class org.iges.grads.server.GradsGridExtracter

timeIntervalNames - Static variable in class org.iges.grads.server.GradsGridExtracter

timeLimit - Variable in class org.iges.grads.server.Task

timeLimit - Variable in class org.iges.grads.server.GradsTaskModule

timeout - Variable in class org.iges.anagram.service.AdminService

title - Variable in class org.iges.grads.server.GradsDataInfo

toGradsString() - Method in class org.iges.util.Bounds.Grid

Returns a string representation of the grid bounds, with the indexes offset by one, because GrADS uses one-based array indexing.

tool - Variable in class org.iges.anagram.Server

tool - Variable in class org.iges.grads.server.GradsUploadModule

tool - Variable in class org.iges.grads.server.GradsUpdateModule

tool - Variable in class org.iges.grads.server.GradsTaskModule

tool - Variable in class org.iges.grads.server.GradsSubsetter

tool - Variable in class org.iges.grads.server.GradsImportModule

tool - Variable in class org.iges.grads.server.GradsDODSModule

tool - Variable in class org.iges.grads.server.GradsAnalysisModule

Tool - class org.iges.anagram.Tool.

A tool for accessing and analyzing data.

Tool() - Constructor for class org.iges.anagram.Tool

toolInfo - Variable in class org.iges.anagram.DataHandle

toString() - Method in class org.iges.util.Range.Double

Returns a string representation of this range

toString() - Method in class org.iges.util.Range.Long

Returns a string representation of this range

toString() - Method in class org.iges.util.Range.Date

Returns a string representation of this range

toString() - Method in class org.iges.util.ExclusiveLock

Prints a list of the threads that currently own locks on this object.

toString() - Method in class org.iges.util.Bounds.Grid

Returns a string representation of the grid bounds.

toString() - Method in class org.iges.util.Bounds.World

Returns a string representation of the world bounds.

toString() - Method in class org.iges.anagram.Setting

toString() - Method in class org.iges.anagram.Privilege

toString() - Method in class org.iges.anagram.Handle

toString() - Method in class org.iges.anagram.ClientRequest

toString() - Method in class org.iges.anagram.AbstractModule

Shuts down the module.

toString() - Method in class org.iges.grads.server.MetadataFilter

toString() - Method in class org.iges.grads.server.MetadataAttribute

toString() - Method in class org.iges.grads.server.GradsGridSubsetter.Serializer.Dim

totalInputSize - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

totalOutputSize - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

tryLock() - Method in interface org.iges.util.Lock

Tries to obtain this lock for the current thread.

tryLock() - Method in class org.iges.util.ExclusiveLock

Tries to obtain a non-exclusive lock for the current thread.

tryLockExclusive() - Method in class org.iges.util.ExclusiveLock

Tries to obtain an exclusive lock for the current thread.

tryLockExclusive(long) - Method in class org.iges.util.ExclusiveLock

Tries to obtain an exclusive lock for the current thread.

type - Variable in class org.iges.grads.server.MetadataAttribute

U

udfBinary - Variable in class org.iges.grads.server.GradsUploadModule

union(Bounds.Grid) - Method in class org.iges.util.Bounds.Grid

union(Range.Long) - Method in class org.iges.util.Range.Long

uniqueElement(String, Document, NodeList) - Method in class org.iges.anagram.Setting

unloadEntries(List) - Method in class org.iges.anagram.Catalog

updateFormat - Variable in class org.iges.anagram.service.Service

updater - Variable in class org.iges.grads.server.GradsTool

uploader - Variable in class org.iges.grads.server.GradsTool

UploadService - class org.iges.anagram.service.UploadService.

Receives client uploads of data objects

UploadService() - Constructor for class org.iges.anagram.service.UploadService

useNice - Variable in class org.iges.grads.server.GradsTaskModule

userDAS - Variable in class org.iges.grads.server.GradsDataInfo

V

val - Variable in class org.iges.grads.server.MetadataAttribute

VALID_TYPES - Static variable in class org.iges.grads.server.MetadataAttribute

validateName(String) - Method in class org.iges.anagram.Handle

value - Variable in class org.iges.anagram.Log.Rotater

valueSize - Variable in class org.iges.grads.server.GradsGridSubsetter.Serializer

var - Variable in class org.iges.grads.server.MetadataAttribute

varName - Variable in class org.iges.grads.server.MetadataFilter

varPrefix - Variable in class org.iges.grads.server.MetadataFilter

varSuffix - Variable in class org.iges.grads.server.MetadataFilter

VERBOSE - Static variable in class org.iges.anagram.Log

Level of log output

verbose() - Method in class org.iges.anagram.AnagramServlet

Same as in AbstractModule.

verbose() - Method in class org.iges.anagram.AbstractModule

Convenience method - returns true if verbose output is enabled for this module.

verbose(Module, String) - Method in class org.iges.anagram.Log

Writes a verbose message to the current log output.

verbose(String) - Method in class org.iges.anagram.AbstractModule

Convenience method - sends a verbose message to the logger

verifyGrads() - Method in class org.iges.grads.server.GradsTaskModule

Checks that the GrADS executable specified is, in fact, a GrADS executable by running a little do-nothing GrADS script.

W

webErrorHandler - Variable in class org.iges.anagram.AnagramServlet

WebErrorService - class org.iges.anagram.service.WebErrorService.

Sends an error message as an HTML page

WebErrorService() - Constructor for class org.iges.anagram.service.WebErrorService

workDir - Variable in class org.iges.grads.server.Task

writeASCIIData(DataHandle, String, Privilege, OutputStream) - Method in class org.iges.anagram.Tool

Writes a data subset to a stream as a text table.

writeASCIIData(DataHandle, String, Privilege, OutputStream) - Method in class org.iges.grads.server.GradsTool

Writes a data subset to a stream in ASCII format.

writeASCIIData(DataHandle, String, Privilege, OutputStream) - Method in class org.iges.grads.server.GradsDODSModule

Writes a data subset to a stream in ASCII format.

writeBinaryData(DataHandle, String, Privilege, OutputStream) - Method in class org.iges.anagram.Tool

Writes a subset of the specified data object to the specified stream, in DODS binary format.

writeBinaryData(DataHandle, String, Privilege, OutputStream) - Method in class org.iges.grads.server.GradsTool

Writes a data subset to a stream in binary format.

writeBinaryData(DataHandle, String, Privilege, OutputStream) - Method in class org.iges.grads.server.GradsDODSModule

Writes a data subset to a stream in binary format.

writeDAS() - Method in class org.iges.grads.server.GradsStnExtracter

Takes the parsed metadata and writes a DAS file.

writeDAS() - Method in class org.iges.grads.server.GradsGridExtracter

writeDAS() - Method in class org.iges.grads.server.GradsExtracter

Takes the parsed metadata and writes a DAS file.

writeDAS(DataHandle, OutputStream) - Method in class org.iges.anagram.Tool

Writes the DODS Data Attribute Structure for the specified data object to the specified stream.

writeDAS(DataHandle, OutputStream) - Method in class org.iges.grads.server.GradsTool

Writes a Data Attribute Structure to a stream.

writeDAS(DataHandle, OutputStream) - Method in class org.iges.grads.server.GradsDODSModule

Writes a DAS object directly to an output stream.

writeDDS() - Method in class org.iges.grads.server.GradsStnExtracter

Takes the parsed metadata and writes a DDS

writeDDS() - Method in class org.iges.grads.server.GradsGridExtracter

writeDDS() - Method in class org.iges.grads.server.GradsExtracter

Takes the parsed metadata and writes a DAS

writeDDS(DataHandle, String, OutputStream) - Method in class org.iges.anagram.Tool

Writes the DODS Data Descriptor Structure for the specified data object to the specified stream.

writeDDS(DataHandle, String, OutputStream) - Method in class org.iges.grads.server.GradsTool

Writes a Data Descriptor Structure to a stream.

writeDDS(DataHandle, String, OutputStream) - Method in class org.iges.grads.server.GradsDODSModule

Writes a DDS object directly to an output stream.

writeDim(String) - Method in class org.iges.grads.server.GradsGridExtracter

Writes an array of coordinate data to a temporary storage file for use by the subsetting modules

writeDirectSubset() - Method in class org.iges.grads.server.GradsGridSubsetter.Serializer

Writes a subset in binary format, directly the original datafile.

writeHeader() - Method in class org.iges.grads.server.GradsGridSubsetter.Serializer

Writes any initial data needed before the actual data streaming

writeProjectedArray(int) - Method in class org.iges.grads.server.GradsGridSubsetter.Serializer

Recursively writes out a multi-dimensional array with strides, in either ASCII or binary format

writeSubsetInfo() - Method in class org.iges.grads.server.GradsStnExtracter

writeSubsetInfo() - Method in class org.iges.grads.server.GradsGridExtracter

writeSubsetInfo() - Method in class org.iges.grads.server.GradsExtracter

Caches any precalculated values for subsetting

writeToCache(ClientRequest, DataHandle, File) - Method in class org.iges.anagram.service.InfoService

writeValue(GradsGridSubsetter.Serializer.Dim) - Method in class org.iges.grads.server.GradsGridSubsetter.Serializer

Writes a single data value, in ASCII or binary form as appropriate.

writeWebInfo(DataHandle, OutputStream) - Method in class org.iges.anagram.Tool

Writes a customized summary of the dataset, in the form of an HTML fragment, to the specified stream.

writeWebInfo(DataHandle, OutputStream) - Method in class org.iges.grads.server.GradsTool

writeWebInfo(DataHandle, OutputStream) - Method in class org.iges.grads.server.GradsDODSModule

Writes an info page directly to an output stream.

writeWebSummary() - Method in class org.iges.grads.server.GradsStnExtracter

Takes the parsed metadata and writes a summary HTML fragment for the ".info" page

writeWebSummary() - Method in class org.iges.grads.server.GradsGridExtracter

writeWebSummary() - Method in class org.iges.grads.server.GradsExtracter

Takes the parsed metadata and writes a ".info" page

X

x - Variable in class org.iges.util.Bounds.Grid

xml - Variable in class org.iges.anagram.Setting

XMLCatalogService - class org.iges.anagram.service.XMLCatalogService.

Sends a complete listing of the server's contents in XML format.

XMLCatalogService() - Constructor for class org.iges.anagram.service.XMLCatalogService

Y

y - Variable in class org.iges.util.Bounds.Grid

Z

z - Variable in class org.iges.util.Bounds.Grid

A B C D E F G H I L M N O P R S T U V W X Y Z